Themes:
Interactive visualization of genotype and phased haplotype data
Interactive visualization of genotype and phased haplotype data
inPHAP is an interactive visualization tool for genotype and phased haplotype data. inPHAP features a variety of interaction possibilities such as zooming, sorting, filtering and aggregation of rows in order to explore patterns hidden in large genetic data sets. As a proof of concept, we apply inPHAP to the phased haplotype data set of Phase 1 of the 1000 Genomes Project. Thereby, inPHAP's ability to show genetic variations on the population as well as on the individuals level is demonstrated for several disease related loci.
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| Techniques: | 2D |
| Software: | Installed |
| Technology: | Java |
| Platform: | Linux, Mac OSX, Windows |
| Requirements: | Java 7 Runtime Environment (JRE 7) |
Project development
Institution:
University of Tübingen
Deutsche Forschungsgemeinschaft and Open Access Publishing Fund of Tübingen University supported this project.
Last updated on 9th November, 2016
