SeqMonk

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A tool to visualise and analyse high throughput mapped sequence data

SeqMonk is a program to enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. It's main features are:

  • Import of mapped data from mapped data (BAM/SAM/bowtie etc)
  • Creation of data groups for visualisation and analysis
  • Visualisation of mapped regions against an annotated genome.
  • Flexible quantitation of the mapped data to allow comparisons between data sets
  • Statistical analysis of data to find regions of interest
  • Creation of reports containing data and genome annotation
Release Date:
March, 2017
Status:
Availability:
Data type:
Techniques:
2D, Dynamic mapping
Software:
Installed
Technology:
Java
Platform:
Linux, Mac OSX, Windows
Requirements:
Java JRE

Project development

Institution: Babraham Institute