Visualizing cells and their connectivity graphs for CompuCell3D

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TitleVisualizing cells and their connectivity graphs for CompuCell3D
Publication TypeConference Paper
Year of Publication2012
AuthorsHeiland, R, Shirinifard, A, Swat, M, Thomas, GL, Sluka, J, Lumsdaine, A, Zaitlen, B, Glazier, JA
Conference Name2012 IEEE Symposium on Biological Data Visualization (BioVis)2012 IEEE Symposium on Biological Data Visualization (BioVis)
PublisherIEEE
Conference LocationSeattle, WA, USA
ISBN Number978-1-4673-4729-7
Accession Number13175499
KeywordsBiological system modeling, Cells (biology), Data visualization, Educational institutions, graphical user interfaces, Solid modeling, Sorting
Abstract

Developing models that simulate the behavior of different types of interacting biological cells can be a very time consuming and error prone task. CompuCell3D is an open source application that addresses this challenge. It provides interactive and customizable visualizations that help a user detect when a model is producing the desired behavior and when it is failing. It also allows for high quality image generation for publications and presentations. CompuCell3D uses the Python programming language which allows for easy extensions. Examples are provided for performing graph analyses of cell connectivity.
URLhttp://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=6378597
DOI10.1109/BioVis.2012.6378597
Refereed DesignationUnknown
Themes: 

Anatomy Physiology and Atlases, Cells and Organisms

CompuCell3D