Natalie Kerracher

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2017
B. Rauscher, Heigwer, F., Breinig, M., Winter, J., and Boutros, M., “GenomeCRISPR - a database for high-throughput CRISPR/Cas9 screens”, Nucleic Acids Research, vol. 45, no. D1, pp. D679 - D686, 2017.
2016
R. F. Schwarz, Tamuri, A. U., Kultys, M., King, J., Godwin, J., Florescu, A. M., Schultz, örg, and Goldman, N., “ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments”, Nucleic Acids Research, vol. 44, no. 8, pp. e77 - e77, 2016.
P. Borrill, Ramirez-Gonzalez, R., and Uauy, C., “expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform”, Plant Physiology, vol. 170, no. 4, pp. 2172 - 2186, 2016.
M. Riveiro, Lebram, M., Andersson, C. X., Sartipy, P., and Synnergren, J., “Interactive Visualization of Large-Scale Gene Expression Data”, in Information Visualisation (IV), 2016 20th International Conference , Lisbon, Portugal, 2016.
I. Tanyalcin, Assaf, C. Al, Gheldof, A., Stouffs, K., Lissens, W., and Jansen, A. C., “I-PV: a CIRCOS module for interactive protein sequence visualization”, Bioinformatics, vol. 32, no. 3, pp. 447 - 449, 2016.
A. Fabregat, Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S., Matthews, L., May, B., Milacic, M., Rothfels, K., Shamovsky, V., Webber, M., Weiser, J., Williams, M., Wu, G., Stein, L., Hermjakob, H., and D'Eustachio, P., “The Reactome pathway Knowledgebase”, Nucleic Acids Research, vol. 44, no. D1, pp. D481 - D487, 2016.
J. Sansen, Thebault, P., Dutour, I., and Bourqui, R., “Visualization of sRNA-mRNA Interaction Predictions”, in Information Visualisation (IV), 2016 20th International Conference , Lisbon, Portugal, 2016.
2015
G. Iakovou, Hayward, S., and Laycock, S. D., “Adaptive GPU-accelerated force calculation for interactive rigid molecular docking using haptics”, Journal of Molecular Graphics and Modelling, vol. 61, pp. 1 - 12, 2015.
ánI. O'Donoghue, Sabir, K. S., Kalemanov, M., Stolte, C., Wellmann, B., Ho, V., Roos, M., o, Nã, Buske, F. A., Heinrich, J., Rost, B., and Schafferhans, A., “Aquaria: simplifying discovery and insight from protein structures”, Nature Methods, vol. 12, no. 2, pp. 98 - 99, 2015.
L. A. Royer, Weigert, M., Günther, U., Maghelli, N., Jug, F., Sbalzarini, I. F., and Myers, E. W., “ClearVolume: open-source live 3D visualization for light-sheet microscopy”, Nature Methods, vol. 12, no. 6, pp. 480 - 481, 2015.
D. Sundell, Mannapperuma, C., Netotea, S., Delhomme, N., Lin, Y. - C., Sjödin, A., Van de Peer, Y., Jansson, S., Hvidsten, T. R., and Street, N. R., “The Plant Genome Integrative Explorer Resource: PlantGenIE.org”, New Phytologist, vol. 208, no. 4, pp. 1149 - 1156, 2015.
C. W. Combe, Fischer, L., and Rappsilber, J., “xiNET: Cross-link Network Maps With Residue Resolution”, Molecular & Cellular Proteomics, vol. 14, no. 4, pp. 1137 - 1147, 2015.
2014
F. Chelaru, Smith, L., Goldstein, N., and Bravo, H. Corrada, “Epiviz: interactive visual analytics for functional genomics data”, Nature Methods, vol. 11, no. 9, pp. 938 - 940, 2014.
S. Tripathi, Dehmer, M., and Emmert-Streib, F., “NetBioV: an R package for visualizing large network data in biology and medicine”, Bioinformatics, vol. 30, no. 19, pp. 2834 - 2836, 2014.
G. Iakovou, Hayward, S., and Laycock, S., “A real-time proximity querying algorithm for haptic-based molecular docking”, Faraday Discuss., vol. 169, pp. 359 - 377, 2014.
M. Kultys, Nicholas, L., Schwarz, R., Goldman, N., and King, J., “Sequence Bundles: a novel method for visualising, discovering and exploring sequence motifs”, BMC Proceedings, vol. 8, no. Suppl 2, p. S8, 2014.
2013
J. Chen, Wu, K., Pruett, W. A., and Hester, R. L., “HumMod Browser: An Exploratory Visualization Tool for Model Validation of Whole-Body Physiology Simulation”, in EuroVis - Short Papers, 2013.
H. Thorvaldsdottir, Robinson, J. T., and Mesirov, J. P., “Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration”, Briefings in Bioinformatics, vol. 14, no. 2, pp. 178 - 192, 2013.
P. Lechat, Souche, E., and Moszer, I., “SynTView — an interactive multi-view genome browser for next-generation comparative microorganism genomics”, BMC Bioinformatics, vol. 14, no. 1, p. 277, 2013.
2012
J. Seita, Sahoo, D., Rossi, D. J., Bhattacharya, D., Serwold, T., Inlay, M. A., Ehrlich, L. I. R., Fathman, J. W., Dill, D. L., and Weissman, I. L., “Gene Expression Commons: An Open Platform for Absolute Gene Expression Profiling”, PLoS ONE, vol. 7, no. 7, p. e40321, 2012.
R. N. Smith, Aleksic, J., Butano, D., Carr, A., Contrino, S., Hu, F., Lyne, M., Lyne, R., Kalderimis, A., Rutherford, K., Stepan, R., Sullivan, J., Wakeling, M., Watkins, X., and Micklem, G., “InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data”, Bioinformatics, vol. 28, no. 23, pp. 3163 - 3165, 2012.
J. Rosindell and Harmon, L. J., “OneZoom: A Fractal Explorer for the Tree of Life”, PLoS Biology, vol. 10, no. 10, p. e1001406, 2012.
2011
M. B. Stocks, Laycock, S. D., and Hayward, S., “Applying forces to elastic network models of large biomolecules using a haptic feedback device”, Journal of Computer-Aided Molecular Design, vol. 25, no. 3, pp. 203 - 211, 2011.
B. Sommer, Dingersen, T., Gamroth, C., Schneider, S. E., Rubert, S., Krüger, J., and Dietz, K. - J., “CELLmicrocosmos 2.2 MembraneEditor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems”, Journal of Chemical Information and Modeling, p. 110419120935062, 2011.
C. Perez-Llamas and Lopez-Bigas, N., “Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps”, PLoS ONE, vol. 6, no. 5, p. e19541, 2011.

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