Themes:
Visualization of anisotropic contact potentials within protein structures
Visualization of anisotropic contact potentials within protein structures
The Contact Geometry Analysis Plugin (CGAP) (for CMView) allows incorporation of geometric orientation propensities into the process of interactive protein modeling and can be used for the generation of improved energy functions. It further supports the analysis of model quality, as it directly illustrates model consistency with known spatial propensities which, in turn, enables users to detect possible structural errors.
CGAP was developed as Plugin for CMView.
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| Techniques: | homology modeling technique |
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| Technology: | Java, CMView |
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| Requirements: | Unix, Mac OSX, Windows |
Project development
Institution:
University of Stuttgart, University of Magdeburg, Max Planck Institute for Molecular Genetics, Berlin
Future applications of the introduced visualizations include flexible docking and structure-based drug design as well as the development into an interactive modeling environment.
Last updated on 24th September, 2014
