Open-source live 3D visualization for light sheet microscopy
ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. With ClearVolume you can see live on your screen the stacks acquired by your microscope instead of waiting for offline post-processing to give you an intuitive and comprehensive view on your data. The biologists can immediately decide whether a sample is worth imaging.ClearVolume can easily be integrated into existing Java, C/C++, Python, or LabVIEW based microscope software. It has a dedicated interface to MicroManager/OpenSpim/OpenSpin control software. ClearVolume supports multi-channels, live 3D data streaming from remote microscopes, and uses a multi-pass Fibonacci rendering algorithm that can handle large volumes. Moreover, ClearVolume is integrated into the Fiji/ImageJ2/KNIME ecosystem. You can now open your stacks with ClearVolume from within these popular frameworks for offline viewing.
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| Techniques: | 3D |
| Software: | Package or library |
| Technology: | Java |
| Platform: | Linux, Mac OSX, Windows |
| Requirements: | Java JDK (1.7); Gradle 2.1; CUDA or OpenCL requirements; A graphics card with at the very minimum 500M of GPU RAM, preferably >=1G, Linux: A recent version of Linux, tested: Ubuntu 14+ , Xubuntu 14+; Eclipse, Mac OSX: Java 8; at least Mac OSX 10.9, Windows: VisualStudio |
Project development
Last updated on 27th January, 2017
