Themes:
Visualization of dynamic channels in biomolecular systems
Visualization of dynamic channels in biomolecular systems
This visualization represents a static view of a dynamic process. This skin surface approach offers an easy and fast way to render such a dynamic path. To do so, all spheres of all path components belonging to the dynamic path are used as input to the skin surface computation. The result is a smooth surface representing the extension surface of all components of the dynamic molecular path.To add a dynamic component to this static view, the skin surface can be color-coded by the time of penetration along the path.
| Release Date: | |
| Status: | |
| Availability: | |
| Data type: | |
| Techniques: | |
| Software: | |
| Technology: | C++, NAMD |
| Platform: | |
| Requirements: | Linux, Mac, Windows |
Project development
Institution:
Dept. of Visualization and Data Analysis, Zuse Institute Berlin (ZIB), Theoretical Molecular Biophysics, Dept. of Physics, FU Berlin, Dept. of Physiology and Biophysics, University of California, Irvine
Ana-Nicoleta Bondar acknowledges financial support from the Marie Curie International Reintegration Award IRG-276920. A set of preliminary molecular dynamics simulations were performed using the University of California, Irvine High-Performance Beowulf Cluster (grant acknowledgment: National Institutes of General Medical Sciences GM-74637 and GM-086685).
Last updated on 12th September, 2014
