
Themes:
Tools to process and visualize chromosome conformation
Tools to process and visualize chromosome conformation
Sequencing techniques that probe the 3D organization of the genome generate large amounts of data whose processing, analysis and visualization is challenging. Hi-C Explorer is a set of tools for the analysis and visualization of chromosome conformation data. Hi-C explorer facilitates the creation of contact matrices, correction of contacts, TAD detection, merging, reordering or chromosomes, conversion from different formats and detection of long-range contacts. Moreover, it allows the visualization of multiple contact matrices along with other types of data like genes, compartments, ChIP-seq coverage tracks (and in general any type of genomic scores) and long range contacts.
Release Date: |
January, 2017 |
Status: | |
Availability: | |
Data type: | |
Techniques: | 2D, Network / hierarchy graph |
Software: | Installed |
Technology: | Python |
Platform: | Linux, Mac OSX, Windows |
Requirements: |
Project development
Institution:
Max Planck Institute of Immunobiology and Epigenetics, Germany
Last updated on 1st February, 2017