Visualisation Tools

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This is a collection of many of the most notable visualisation tools produced by biologists and visualisation researchers. If you have a tool you would like to see here, please register and you will be able to add your visualisation tool to the site or contact us for more advice.

HiGlass showing several ChIP-seq tracks with a Hi-C map
HiGlass
Genome
Scalable Insets
Genome
karyoploteR
Genome
HiPiler's interface
HiPiler
Genome
Multi-view accessible with Listeriomics: Genomics, Transcriptomics, Proteomics, Genome Viewer, Co-expression Networks, Phylogeny, Small RNAs
Listeriomics
Cells and Organisms, Genome
Supramap
Supramap
Genome
Epiviz
Epiviz
Genome
expVIP
expVIP
Genome
panX
Genome
gene.iobio.io
iobio
Genome
EK3D logo
EK3D
Genome
Annotools overview
Annotools
Genome
Phandango - metadata example
Phandango
Genome, Phylogenetics
NinjaViewer interface
NinjaViewer
Genome
Gene Expression Commons - geneset activity profiling
Gene Expression Commons
Genome
GenomeCRISPR concept
GenomeCRISPR
Genome
Hi-C Explorer
Genome
Mango interface
Mango
Genome
SynTView
Genome
PlantGenIE
Genome
Integrated Genome Browser
Integrated Genome Browser
Genome
Sequence Bundles web tool - screen capture
Sequence Bundles
Genome
Sequence logo viewer
Genome
Aequatus
Genome
TGAC Browser
Genome
Pipit
Pipit
Genome
ArkMAP
ArkMAP
Genome
GenotypeChecker
GenotypeChecker
Genome, Populations
Gremlin
Gremlin
Genome
Variant View
Variant View
Genome
Strudel
Strudel
Genome
Tableau
Tableau
Genome
IGV
IGV
Genome
The inPHAP graphical user interface. It consists of six components which are highlighted with boxes of different color. Blue (1): The haplotype visualization panel providing color-encoded base information for phased haplotype or unphased genotype data, green (2): the subject meta-information panel next to the haplotype visualization panel, red (3): the SNV meta-information panel below the haplotype visualization panel, purple (4): the overview panel, displaying the viewers current focus in the haplotype vis
inPHAP
Genome
A view of LayerCake, showing 24 sequences, with each block of the color field aggregating 50 individual base pairs. Here the user has zoomed in on one such block, showing all reads for 50 base pairs simultaneously in a zoomed in area. The reference genome is repeated between each row for context. The user can further mouse over a particular column to see the identity of variants (in terms of base pairs) in each sequence in the histogram on the far right. Rows not within the zoom window are slightly “fogged”
LayerCake
Genome, Populations
A screenshot showing the iHat interface
iHAT
Genome